species:   Fugra
pid:       PID0954
parent:    FgmilR-7dps-74
paralog:   
locus:     NC_026476.1:6957717-6957785
matures:   ['UGCGGCGAAUAGAAUAUUGAC', 'CAACUUGCUGUUCGGGCCCUGCAGG']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026476.1:6957717-6957785

1 out of bounds
6 alignments
6 proper strand
3 stranded perfect matches

***********************                   ***************************
CCUGCGGCGAAUAGAAUAUUGACGAUGACAAUUUGCCGCUUUGACAACUUGCUGUUCGGGCCCUGCAGG
((((((((((((((....(((.(((.(.(........)).))).)))....)))))))....)))))))
--UGCGGCGAAUAGAAUAUUGAC---------------------------------------------- l=21 a=1 c
--------------------------------------------CAACUUGCUGUUCGGGCCCUGCAGG l=25 a=0 c*
--UGCGGCGAAUAGAAUAUUGAC---------------------------------------------- l=21 a=1 ma
--------------------------------------------CAACUUGCUGUUCGGGCCCUGCAGG l=25 a=0 ma*

--UGCGGCGAAUAGAAUAUUGAC---------------------------------------------- l=21 a=1 (c,ma)
--UGCGGCGAAUAGAAUAUUGACGA-------------------------------------------- l=23 a=1 
--UGCGGCGAAUAGAAUAUUGACGAc------------------------------------------- l=24 a=1 
--UGCGGCGAAUAGAAUAUUGACGAUa------------------------------------------ l=25 a=1 
----------------UAUUGACGAUGACAAUUUGCCGC------------------------------ l=23 a=1 
-----------------------------------------UGACAACUUGCUGUUCGGGCu------- l=21 a=1 

mb-01111
ax-1001011
ku-01
ss-110111101000
fn-011
